• 1728 Citations
  • 18 h-Index
20002020

Research output per year

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Research Output

  • 1728 Citations
  • 18 h-Index
  • 45 Article
  • 2 Conference contribution
  • 2 Review article
  • 1 Chapter
Article

A conserved charged single α-helix with a putative steric role in paraspeckle formation

Dobson, L., Nyitray, L. & Gáspári, Z., dec. 2015, In : RNA. 21, 12, p. 2023-2029 7 p.

Research output: Article

7 Citations (Scopus)

A protein classification benchmark collection for machine learning

Sonego, P., Pacurar, M., Dhir, S., Kertész-Farkas, A., Kocsor, A., Gáspári, Z., Leunissen, J. A. M. & Pongor, S., jan. 2007, In : Nucleic acids research. 35, SUPPL. 1, p. D232-D236

Research output: Article

37 Citations (Scopus)

A redesigned genetic code for selective labeling in protein NMR

Gáspári, Z., Pál, G. & Perczel, A., aug. 1 2008, In : BioEssays. 30, 8, p. 772-780 9 p.

Research output: Article

3 Citations (Scopus)

Are proposed early genetic codes capable of encoding viable proteins?

Ángyán, A. F., Ortutay, C. & Gáspári, Z., máj. 2014, In : Journal of Molecular Evolution. 78, 5, p. 263-274 12 p.

Research output: Article

4 Citations (Scopus)

A simple fold with variations: The pacifastin inhibitor family

Gáspári, Z., Ortutay, C. & Perczel, A., márc. 1 2004, In : Bioinformatics. 20, 4, p. 448-451 4 p.

Research output: Article

14 Citations (Scopus)
21 Citations (Scopus)

Charged single α-helix: A versatile protein structural motif

Süveges, D., Gáspári, Z., Tóth, G. & Nyitray, L., márc. 1 2009, In : Proteins: Structure, Function and Bioinformatics. 74, 4, p. 905-916 12 p.

Research output: Article

47 Citations (Scopus)
38 Citations (Scopus)

CoNSEnsX: An ensemble view of protein structures and NMR-derived experimental data

Ángyn, A. F., Szappanos, B., Perczel, A. & Gspri, Z., nov. 1 2010, In : BMC Structural Biology. 10, 39.

Research output: Article

7 Citations (Scopus)
4 Citations (Scopus)

D19S mutation of the cationic, cysteine-rich protein PAF: Novel insights into its structural dynamics, thermal unfolding and antifungal function

Sonderegger, C., Fizil, Á., Burtscher, L., Hajdu, D., Muñoz, A., Gáspári, Z., Read, N. D., Batta, G. & Marx, F., jan. 2017, In : PloS one. 12, 1, e0169920.

Research output: Article

17 Citations (Scopus)

Detecting atypical examples of known domain types by sequence similarity searching: The SBASE domain library approach

Dhir, S., Pacurar, M., Franklin, D., Gáspári, Z., Kertész-Farkas, A., Kocsor, A., Eisenhaber, F. & Pongor, S., dec. 1 2010, In : Current Protein and Peptide Science. 11, 7, p. 538-549 12 p.

Research output: Article

6 Citations (Scopus)

Detection of single alpha-helices in large protein sequence sets using hardware acceleration

Kovács, Á., Dudola, D., Nyitray, L., Tóth, G., Nagy, Z. & Gáspári, Z., okt. 2018, In : Journal of Structural Biology. 204, 1, p. 109-116 8 p.

Research output: Article

1 Citation (Scopus)

Different modes of barrel opening suggest a complex pathway of ligand binding in human gastrotropin

Harmat, Z., Szabó, A. L., Tőke, O. & Gáspári, Z., máj. 2019, In : PloS one. 14, 5, e0216142.

Research output: Article

Open Access

Distribution and evolution of short tandem repeats in closely related bacterial genomes

Kassai-Jáger, E., Ortutay, C., Tóth, G., Vellai, T. & Gáspári, Z., febr. 29 2008, In : Gene. 410, 1, p. 18-25 8 p.

Research output: Article

19 Citations (Scopus)

Divergent microsatellite evolution in the human and chimpanzee lineages

Gáspári, Z., Ortutay, C. & Tóth, G., máj. 29 2007, In : FEBS letters. 581, 13, p. 2523-2526 4 p.

Research output: Article

10 Citations (Scopus)

Efficient recognition of folds in protein 3D structures by the improved PRIDE algorithm

Gáspári, Z., Vlahovicek, K. & Pongor, S., aug. 1 2005, In : Bioinformatics. 21, 15, p. 3322-3323 2 p.

Research output: Article

27 Citations (Scopus)
13 Citations (Scopus)

Fast protein fold estimation from NMR-derived distance restraints

Ángyán, A. F., Perczel, A., Pongor, S. & Gáspári, Z., jan. 15 2008, In : Bioinformatics. 24, 2, p. 272-275 4 p.

Research output: Article

8 Citations (Scopus)
4 Citations (Scopus)

Folded-unfolded cross-predictions and protein evolution: The case study of coiled-coils

Szappanos, B., Süveges, D., Nyitray, L., Perczel, A. & Gáspári, Z., ápr. 1 2010, In : FEBS letters. 584, 8, p. 1623-1627 5 p.

Research output: Article

17 Citations (Scopus)

Functional aspects of the solution structure and dynamics of PAF - A highly-stable antifungal protein from Penicillium chrysogenum

Batta, G., Barna, T., Gáspári, Z., Sándor, S., Kövér, K. E., Binder, U., Sarg, B., Kaiserer, L., Chhillar, A. K., Eigentler, A., Leiter, É., Hegedüs, N., Pócsi, I., Lindner, H. & Marx, F., máj. 2009, In : FEBS Journal. 276, 10, p. 2875-2890 16 p.

Research output: Article

67 Citations (Scopus)

Generation and analysis of the conformational potential energy surfaces of N-acetyl-N-methyl-L-alanine-N′-methylamide. An exploratory ab initio study

Bágyi, I., Balogh, B., Czajlik, A., Éliás, O., Gáspári, Z., Gergely, V., Hudáky, I., Hudáky, P., Kalászi, A., Károlyházy, L., Keserû, K., Kiss, R., Krajsovszky, G., Láng, B., Nagy, T., Rácz, Á., Szentesi, A., Tábi, T., Tapolcsányi, P., Vaik, J. & 5 others, Koo, J. C. P., Chass, G. A., Farkas, Ö., Perczel, A. & Mátyus, P., máj. 5 2003, In : Journal of Molecular Structure: THEOCHEM. 625, 1-3, p. 121-136 16 p.

Research output: Article

12 Citations (Scopus)
3 Citations (Scopus)
28 Citations (Scopus)
4 Citations (Scopus)
3 Citations (Scopus)

Ligand-dependent intra- and interdomain motions in the PDZ12 tandem regulate binding interfaces in postsynaptic density protein-95

Kovács, B., Zajácz-Epresi, N. & Gáspári, Z., márc. 1 2020, In : FEBS letters. 594, 5, p. 887-902 16 p.

Research output: Article

Open Access

Local binding with globally distributed changes in a small protease inhibitor upon enzyme binding

Gáspári, Z., Szenthe, B., Patthy, A., Westler, W. M., Gráf, L. & Perczel, A., ápr. 1 2006, In : FEBS Journal. 273, 8, p. 1831-1842 12 p.

Research output: Article

6 Citations (Scopus)

Microsatellites in different eukaryotic genomes: Surveys and analysis

Tóth, G., Gáspári, Z. & Jurka, J., 2000, In : Genome Research. 10, 7, p. 967-981 15 p.

Research output: Article

946 Citations (Scopus)
12 Citations (Scopus)

New antimicrobial potential and structural properties of PAFB: A Cationic, cysteine-rich protein from penicillium chrysogenum Q176

Huber, A., Hajdu, D., Bratschun-Khan, D., Gáspári, Z., Varbanov, M., Philippot, S., Fizil, Á., Czajlik, A., Kele, Z., Sonderegger, C., Galgóczy, L., Bodor, A., Marx, F. & Batta, G., dec. 1 2018, In : Scientific reports. 8, 1, 1751.

Research output: Article

16 Citations (Scopus)

Occurrence of ordered and disordered structural elements in postsynaptic proteins supports optimization for interaction diversity

Kiss-Tóth, A., Dobson, L., Péterfia, B., ángyán, A. F., Ligeti, B., Lukács, G. & Gáspári, Z., jan. 1 2019, In : Entropy. 21, 8, 761.

Research output: Article

Open Access

Probing dynamic protein ensembles with atomic proximity measures

Gáspári, Z., Ángyán, A. F., Dhir, S., Franklin, D., Perczel, A., Pintar, A. & Pongor, S., dec. 1 2010, In : Current Protein and Peptide Science. 11, 7, p. 515-522 8 p.

Research output: Article

6 Citations (Scopus)

Protein Dynamics as Reported by NMR

Gáspári, Z. & Perczel, A., okt. 15 2010, In : Annual Reports on NMR Spectroscopy. 71, C, p. 35-75 41 p.

Research output: Article

12 Citations (Scopus)

Reconciling the lock-and-key and dynamic views of canonical serine protease inhibitor action

Gáspári, Z., Várnai, P., Szappanos, B. & Perczel, A., jan. 4 2010, In : FEBS letters. 584, 1, p. 203-206 4 p.

Research output: Article

18 Citations (Scopus)
24 Citations (Scopus)

Speciation in Chlamydia: Genomewide Phylogenetic Analyses Identified a Reliable Set of Acquired Genes

Ortutay, C., Gáspári, Z., Tóth, G., Jáger, E., Vida, G., Orosz, L. & Vellai, T., dec. 1 2003, In : Journal of Molecular Evolution. 57, 6, p. 672-680 9 p.

Research output: Article

18 Citations (Scopus)
49 Citations (Scopus)

Structure-oriented rational design of chymotrypsin inhibitor models

Mucsi, Z., Gáspári, Z., Orosz, G. & Perczel, A., szept. 2003, In : Protein Engineering. 16, 9, p. 673-681 9 p.

Research output: Article

Open Access
7 Citations (Scopus)
22 Citations (Scopus)
3 Citations (Scopus)

Vicinal Disulfide Bridge Conformers by Experimental Methods and by Ab Initio and DFT Molecular Computations

Hudáky, I., Gáspári, Z., Carugo, O., Čemažar, M., Pongor, S. & Perczel, A., ápr. 1 2004, In : Proteins: Structure, Function and Genetics. 55, 1, p. 152-168 17 p.

Research output: Article

26 Citations (Scopus)

Vicinal disulfide turns

Carugo, O., Čemažar, M., Zahariev, S., Hudáky, I., Gáspári, Z., Perczel, A. & Pongor, S., szept. 2003, In : Protein Engineering. 16, 9, p. 637-639 3 p.

Research output: Article

Open Access
89 Citations (Scopus)
20 Citations (Scopus)
Chapter

Accurate NMR Determinations of Proton–Proton Distances

Boros, S., Gáspári, Z. & Batta, G., 2018, Annual Reports on NMR Spectroscopy. Webb, G. A. (ed.). Academic Press Inc., p. 1-39 39 p. (Annual Reports on NMR Spectroscopy; vol. 94).

Research output: Chapter

1 Citation (Scopus)
Conference contribution

Accelerating a charged single α-helix search algorithm in protein sequences using FPGA

Nagy, Z., Gáspári, Z. & Kovács, Á., jan. 1 2016, CNNA 2016 - 15th International Workshop on Cellular Nanoscale Networks and Their Applications. Tetzlaff, R. (ed.). IEEE Computer Society, p. 117-118 2 p. (International Workshop on Cellular Nanoscale Networks and their Applications; vol. 2016-August).

Research output: Conference contribution

2 Citations (Scopus)

Acceleration of a protein structure comparison algorithm on FPGA

Goretity, A., Nagy, Z. & Gáspári, Z., okt. 31 2017, 2017 European Conference on Circuit Theory and Design, ECCTD 2017. Institute of Electrical and Electronics Engineers Inc., 8093342

Research output: Conference contribution

Review article

Coiled coils as possible models of protein structure evolution

Ga'spa'ri, Z. & Nyitray, L., jún. 1 2011, In : Biomolecular Concepts. 2, 3, p. 199-210 12 p.

Research output: Review article

8 Citations (Scopus)

Ensemble-based interpretations of NMR structural data to describe protein internal dynamics

Ángyán, A. F. & Gáspári, Z., szept. 2013, In : Molecules. 18, 9, p. 10548-10567 20 p.

Research output: Review article

22 Citations (Scopus)