The SBASE protein domain library, release 8.0: A collection of annotated protein sequence segments

János Murvai, Kristian Vlahovicek, E. Barta, Sándor Pongor

Research output: Contribution to journalArticle

23 Citations (Scopus)

Abstract

SBASE 8.0 is the eighth release of the SBASE library of protein domain sequences that contains 294 898 annotated structural, functional, ligand-binding and topogenic segments of proteins, cross-referenced to most major sequence databases and sequence pattern collections. The entries are clustered into over 2005 statistically validated domain groups (SBASE-A) and 595 non-validated groups (SBASE-B), provided with several WWW-based search and browsing facilities for online use. A domain-search facility was developed, based on non-parametric pattern recognition methods, including artificial neural networks. SBASE 8.0 is freely available by anonymous 'ftp' file transfer from ftp.icgeb.trieste.it. Automated searching of SBASE can be carried out with the WWW servers http://www.icgeb.trieste.it/ sbase/ and http://sbase.abc.hu/sbase/.

Original languageEnglish
Pages (from-to)58-60
Number of pages3
JournalNucleic Acids Research
Volume29
Issue number1
Publication statusPublished - Jan 1 2001

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Databases
Ligands
Proteins
Protein Domains

ASJC Scopus subject areas

  • Genetics

Cite this

The SBASE protein domain library, release 8.0 : A collection of annotated protein sequence segments. / Murvai, János; Vlahovicek, Kristian; Barta, E.; Pongor, Sándor.

In: Nucleic Acids Research, Vol. 29, No. 1, 01.01.2001, p. 58-60.

Research output: Contribution to journalArticle

Murvai, János ; Vlahovicek, Kristian ; Barta, E. ; Pongor, Sándor. / The SBASE protein domain library, release 8.0 : A collection of annotated protein sequence segments. In: Nucleic Acids Research. 2001 ; Vol. 29, No. 1. pp. 58-60.
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