The role of solvation in the binding selectivity of the L-type calcium channel

Dezso Boda, Douglas Henderson, Dirk Gillespie

Research output: Contribution to journalArticle

14 Citations (Scopus)

Abstract

We present grand canonical Monte Carlo simulation results for a reduced model of the L-type calcium channel. While charged residues of the protein amino acids in the selectivity filter are treated explicitly, most of the degrees of freedom (including the rest of the protein and the solvent) are represented by their dielectric response, i.e., dielectric continua. The new aspect of this paper is that the dielectric coefficient in the channel is different from that in the baths. The ions entering the channel, thus, cross a dielectric boundary at the entrance of the channel. Simulating this case has been made possible by our recent methodological development [D. Boda, D. Henderson, B. Eisenberg, and D. Gillespie, J. Chem. Phys. 135, 064105 (2011)]10.1063/1.3622857. Our main focus is on the effect of solvation energy (represented by the Born energy) on monovalent vs. divalent ion selectivity in the channel. We find no significant change in selectivity by changing the dielectric coefficient in the channel because the larger solvation penalty is counterbalanced by the enhanced Coulomb attraction inside the channel as soon as we use the Born radii (fitted to experimental hydration energies) to compute the solvation penalty from the Born equation.

Original languageEnglish
Article number055103
JournalThe Journal of Chemical Physics
Volume139
Issue number5
DOIs
Publication statusPublished - Aug 7 2013

Fingerprint

L-Type Calcium Channels
Solvation
solvation
calcium
selectivity
Baths
Ion Channels
Proteins
Ions
Amino Acids
penalties
proteins
Hydration
coefficients
entrances
attraction
amino acids
hydration
energy
baths

ASJC Scopus subject areas

  • Physics and Astronomy(all)
  • Physical and Theoretical Chemistry
  • Medicine(all)

Cite this

The role of solvation in the binding selectivity of the L-type calcium channel. / Boda, Dezso; Henderson, Douglas; Gillespie, Dirk.

In: The Journal of Chemical Physics, Vol. 139, No. 5, 055103, 07.08.2013.

Research output: Contribution to journalArticle

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