Sequence alterations can mask each other's presence during screening with SSCP or heteroduplex analysis: BRCA genes as examples

Tamas I. Orban, Bela Csokay, E. Oláh

Research output: Contribution to journalArticle

16 Citations (Scopus)

Abstract

For mutation detection, various screening techniques are widely used because DNA sequencing, the gold-standard method, is still considered to be expensive and laborious for high-throughput screening. Single-strand conformation polymorphism (SSCP) analysis, heteroduplex analysis (HA) and their variant techniques are popular and frequently used for this purpose. It is widely accepted that when searching for unknown sequence variations, any revealed distinct pattern should always be sequenced. We give examples here of the BRCA1 and BRCA2 genes where the SSCP/HA techniques can produce ambiguous predictions if used to detect known genetic variants compared to positive controls. Using direct DNA sequencing, we provide evidence that in such cases, mutations or polymorphisms can mask each other's presence. This phenomenon can often influence the results of any DNA testing because genetic variations such as single-nucleotide polymorphisms occur frequently in the human genome. We suggest that even in the case of known electrophoretic patterns of well-characterized genetic alterations, every-sequence alteration should be confirmed by direct DNA sequencing, especially if genetic testing is carried out for diagnostic purposes.

Original languageEnglish
Pages (from-to)94-98
Number of pages5
JournalBioTechniques
Volume29
Issue number1
Publication statusPublished - 2000

Fingerprint

Heteroduplex Analysis
Masks
Polymorphism
DNA Sequence Analysis
Conformations
Screening
Genes
DNA
BRCA2 Gene
BRCA1 Gene
Mutation
Genetic Testing
Human Genome
Gold
Single Nucleotide Polymorphism
Testing
Nucleotides
Throughput

ASJC Scopus subject areas

  • Clinical Biochemistry
  • Biochemistry, Genetics and Molecular Biology(all)

Cite this

Sequence alterations can mask each other's presence during screening with SSCP or heteroduplex analysis : BRCA genes as examples. / Orban, Tamas I.; Csokay, Bela; Oláh, E.

In: BioTechniques, Vol. 29, No. 1, 2000, p. 94-98.

Research output: Contribution to journalArticle

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