Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization

Kasper D. Hansen, Sarven Sabunciyan, Ben Langmead, Noemi Nagy, Rebecca Curley, Georg Klein, Eva Klein, Daniel Salamon, Andrew P. Feinberg

Research output: Contribution to journalArticle

71 Citations (Scopus)

Abstract

Altered DNA methylation occurs ubiquitously in human cancer from the earliest measurable stages. A cogent approach to understanding the mechanism and timing of altered DNA methylation is to analyze it in the context of carcinogenesis by a defined agent. Epstein-Barr virus (EBV) is a human oncogenic herpesvirus associated with lymphoma and nasopharyngeal carcinoma, but also used commonly in the laboratory to immortalize human B-cells in culture. Here we have performed whole-genome bisulfite sequencing of normal B-cells, activated B-cells, and EBV-immortalized B-cells from the same three individuals, in order to identify the impact of transformation on the methylome. Surprisingly, large-scale hypomethylated blocks comprising two-thirds of the genome were induced by EBV immortalization but not by B-cell activation per se. These regions largely corresponded to hypomethylated blocks that we have observed in human cancer, and they were associated with gene-expression hypervariability, similar to human cancer, and consistent with a model of epigenomic change promoting tumor cell heterogeneity. We also describe small-scale changes in DNA methylation near CpG islands. These results suggest that methylation disruption is an early and critical step in malignant transformation.

Original languageEnglish
Pages (from-to)177-184
Number of pages8
JournalGenome Research
Volume24
Issue number2
DOIs
Publication statusPublished - Feb 2014

ASJC Scopus subject areas

  • Genetics
  • Genetics(clinical)

Fingerprint Dive into the research topics of 'Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization'. Together they form a unique fingerprint.

  • Cite this

    Hansen, K. D., Sabunciyan, S., Langmead, B., Nagy, N., Curley, R., Klein, G., Klein, E., Salamon, D., & Feinberg, A. P. (2014). Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization. Genome Research, 24(2), 177-184. https://doi.org/10.1101/gr.157743.113