Joint analysis of host and pathogen genomes

István Bartha, Amalio Telenti, V. Müller, Jacques Fellay

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

Joint analysis of existing host genetic and HIV sequencing data has been limited so far to HLA alleles and viral mutations. We performed a genome-wide survey of associations between human single nucletide polymorphisms (SNP) and HIV genetic variation across the whole viral genome.

Original languageEnglish
Title of host publication2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011
Pages935
Number of pages1
DOIs
Publication statusPublished - 2011
Event2011 IEEE International Conference onBioinformatics and Biomedicine Workshops, BIBMW 2011 - Atlanta, GA, United States
Duration: Nov 12 2011Nov 15 2011

Other

Other2011 IEEE International Conference onBioinformatics and Biomedicine Workshops, BIBMW 2011
CountryUnited States
CityAtlanta, GA
Period11/12/1111/15/11

Fingerprint

Pathogens
Genes
HIV
Genome
Viral Genome
Polymorphism
Alleles
Mutation
Surveys and Questionnaires

Keywords

  • GWAS
  • HIV
  • phylogenetics

ASJC Scopus subject areas

  • Biomedical Engineering
  • Health Informatics
  • Health Information Management

Cite this

Bartha, I., Telenti, A., Müller, V., & Fellay, J. (2011). Joint analysis of host and pathogen genomes. In 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011 (pp. 935). [6112509] https://doi.org/10.1109/BIBMW.2011.6112509

Joint analysis of host and pathogen genomes. / Bartha, István; Telenti, Amalio; Müller, V.; Fellay, Jacques.

2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. 2011. p. 935 6112509.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Bartha, I, Telenti, A, Müller, V & Fellay, J 2011, Joint analysis of host and pathogen genomes. in 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011., 6112509, pp. 935, 2011 IEEE International Conference onBioinformatics and Biomedicine Workshops, BIBMW 2011, Atlanta, GA, United States, 11/12/11. https://doi.org/10.1109/BIBMW.2011.6112509
Bartha I, Telenti A, Müller V, Fellay J. Joint analysis of host and pathogen genomes. In 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. 2011. p. 935. 6112509 https://doi.org/10.1109/BIBMW.2011.6112509
Bartha, István ; Telenti, Amalio ; Müller, V. ; Fellay, Jacques. / Joint analysis of host and pathogen genomes. 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. 2011. pp. 935
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