Increased concentrations of radioisotopically-labeled complementary ribonucleic acid probe, dextran sulfate, and dithiothreitol in the hybridization buffer can improve results of in situ hybridization histochemistry

E. Hrabovszky, Sandra L. Petersen

Research output: Contribution to journalArticle

29 Citations (Scopus)

Abstract

The goal of the present studies was to optimize mRNA detection with radioisotopic in situ hybridization histochemistry (ISHH). Test experiments performed on sections of rat brain tissue used computer-assisted image analysis to compare autoradiographic signals resulting when varying concentrations of 35S-labeled cRNA probes, dextran sulfate (DS), and dithiothreitol (DTT) were used for ISHH. We found that greatly enhanced corrected signal density (total density of signal area minus background density) was obtained using concentrations of probe and/or DS that were several-fold higher than those widely recommended in published ISHH procedures (probe concentration >4 × 104 cpm/μl; DS concentration >10%). Extended hybridization reaction (>16 hr) also significantly augmented the corrected signal density. Finally, nonspecific probe binding was greatly reduced and corrected signal density enhanced by including 750-1000 mM, rather than the widely used 10-200 mM DTT, in the hybridization buffer. These observations indicate that the low efficiency of hybridization and the formation of high background may largely compromise the sensitivity of routine ISHH procedures. We suggest that the new method using increased concentrations of 3S-labeled cRNA probe, DS, and DTT will be especially important for the cellular localization of rare mRNA species.

Original languageEnglish
Pages (from-to)1389-1400
Number of pages12
JournalJournal of Histochemistry and Cytochemistry
Volume50
Issue number10
Publication statusPublished - Oct 2002

Fingerprint

Dextran Sulfate
Dithiothreitol
In Situ Hybridization
Buffers
RNA
Complementary RNA
Messenger RNA
Computer-Assisted Image Processing
Brain

Keywords

  • Acid probes
  • Autoradiography
  • Background
  • Brain
  • Complementary ribonucleic
  • Dextran sulfate
  • Dithiothreitol
  • Image analysis
  • In situ hybridization
  • Quantitation
  • Radioisotope

ASJC Scopus subject areas

  • Anatomy
  • Cell Biology

Cite this

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title = "Increased concentrations of radioisotopically-labeled complementary ribonucleic acid probe, dextran sulfate, and dithiothreitol in the hybridization buffer can improve results of in situ hybridization histochemistry",
abstract = "The goal of the present studies was to optimize mRNA detection with radioisotopic in situ hybridization histochemistry (ISHH). Test experiments performed on sections of rat brain tissue used computer-assisted image analysis to compare autoradiographic signals resulting when varying concentrations of 35S-labeled cRNA probes, dextran sulfate (DS), and dithiothreitol (DTT) were used for ISHH. We found that greatly enhanced corrected signal density (total density of signal area minus background density) was obtained using concentrations of probe and/or DS that were several-fold higher than those widely recommended in published ISHH procedures (probe concentration >4 × 104 cpm/μl; DS concentration >10{\%}). Extended hybridization reaction (>16 hr) also significantly augmented the corrected signal density. Finally, nonspecific probe binding was greatly reduced and corrected signal density enhanced by including 750-1000 mM, rather than the widely used 10-200 mM DTT, in the hybridization buffer. These observations indicate that the low efficiency of hybridization and the formation of high background may largely compromise the sensitivity of routine ISHH procedures. We suggest that the new method using increased concentrations of 3S-labeled cRNA probe, DS, and DTT will be especially important for the cellular localization of rare mRNA species.",
keywords = "Acid probes, Autoradiography, Background, Brain, Complementary ribonucleic, Dextran sulfate, Dithiothreitol, Image analysis, In situ hybridization, Quantitation, Radioisotope",
author = "E. Hrabovszky and Petersen, {Sandra L.}",
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T1 - Increased concentrations of radioisotopically-labeled complementary ribonucleic acid probe, dextran sulfate, and dithiothreitol in the hybridization buffer can improve results of in situ hybridization histochemistry

AU - Hrabovszky, E.

AU - Petersen, Sandra L.

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AB - The goal of the present studies was to optimize mRNA detection with radioisotopic in situ hybridization histochemistry (ISHH). Test experiments performed on sections of rat brain tissue used computer-assisted image analysis to compare autoradiographic signals resulting when varying concentrations of 35S-labeled cRNA probes, dextran sulfate (DS), and dithiothreitol (DTT) were used for ISHH. We found that greatly enhanced corrected signal density (total density of signal area minus background density) was obtained using concentrations of probe and/or DS that were several-fold higher than those widely recommended in published ISHH procedures (probe concentration >4 × 104 cpm/μl; DS concentration >10%). Extended hybridization reaction (>16 hr) also significantly augmented the corrected signal density. Finally, nonspecific probe binding was greatly reduced and corrected signal density enhanced by including 750-1000 mM, rather than the widely used 10-200 mM DTT, in the hybridization buffer. These observations indicate that the low efficiency of hybridization and the formation of high background may largely compromise the sensitivity of routine ISHH procedures. We suggest that the new method using increased concentrations of 3S-labeled cRNA probe, DS, and DTT will be especially important for the cellular localization of rare mRNA species.

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KW - Autoradiography

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KW - Complementary ribonucleic

KW - Dextran sulfate

KW - Dithiothreitol

KW - Image analysis

KW - In situ hybridization

KW - Quantitation

KW - Radioisotope

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