Genetic characterization of northeastern Italian population isolates in the context of broader European genetic diversity

Tonu Esko, Massimo Mezzavilla, Mari Nelis, Christelle Borel, Tadeusz Debniak, Eveliina Jakkula, Antonio Julia, Sena Karachanak, Andrey Khrunin, Peter Kisfali, Veronika Krulisova, Zita Ausrele Kučinskiené, Karola Rehnström, Michela Traglia, Liene Nikitina-Zake, Fritz Zimprich, Stylianos E. Antonarakis, Xavier Estivill, Damjan Glavač, Ivo GutJanis Klovins, Michael Krawczak, Vaidutis Kučinskas, Mark Lathrop, Milan Macek, Sara Marsal, Thomas Meitinger, Bela Melegh, Svetlana Limborska, Jan Lubinski, Aarno Paolotie, Stefan Schreiber, Draga Toncheva, Daniela Toniolo, H. Erich Wichmann, Alexander Zimprich, Mait Metspalu, Paolo Gasparini, Andres Metspalu, Pio D'Adamo

Research output: Contribution to journalArticle

41 Citations (Scopus)

Abstract

Population genetic studies on European populations have highlighted Italy as one of genetically most diverse regions. This is possibly due to the country's complex demographic history and large variability in terrain throughout the territory. This is the reason why Italy is enriched for population isolates, Sardinia being the best-known example. As the population isolates have a great potential in disease-causing genetic variants identification, we aimed to genetically characterize a region from northeastern Italy, which is known for isolated communities. Total of 1310 samples, collected from six geographically isolated villages, were genotyped at >145 000 single-nucleotide polymorphism positions. Newly genotyped data were analyzed jointly with the available genome-wide data sets of individuals of European descent, including several population isolates. Despite the linguistic differences and geographical isolation the village populations still show the greatest genetic similarity to other Italian samples. The genetic isolation and small effective population size of the village populations is manifested by higher levels of genomic homozygosity and elevated linkage disequilibrium. These estimates become even more striking when the detected substructure is taken into account. The observed level of genetic isolation in Friuli-Venezia Giulia region is more extreme according to several measures of isolation compared with Sardinians, French Basques and northern Finns, thus proving the status of an isolate.

Original languageEnglish
Pages (from-to)659-665
Number of pages7
JournalEuropean Journal of Human Genetics
Volume21
Issue number6
DOIs
Publication statusPublished - Jun 1 2013

Keywords

  • genetic distance
  • isolated population
  • population genetics

ASJC Scopus subject areas

  • Genetics
  • Genetics(clinical)

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    Esko, T., Mezzavilla, M., Nelis, M., Borel, C., Debniak, T., Jakkula, E., Julia, A., Karachanak, S., Khrunin, A., Kisfali, P., Krulisova, V., Kučinskiené, Z. A., Rehnström, K., Traglia, M., Nikitina-Zake, L., Zimprich, F., Antonarakis, S. E., Estivill, X., Glavač, D., ... D'Adamo, P. (2013). Genetic characterization of northeastern Italian population isolates in the context of broader European genetic diversity. European Journal of Human Genetics, 21(6), 659-665. https://doi.org/10.1038/ejhg.2012.229