Fine mapping and conditional analysis identify a new mutation in the autoimmunity susceptibility gene BLK that leads to reduced half-life of the BLK protein

Angélica M. Delgado-Vega, Mikhail G. Dozmorov, Manuel Bernal Quirós, Ying Yu Wu, Belén Martínez-García, Sergey V. Kozyrev, Johan Frostegård, Lennart Truedsson, Enrique De Ramón, María F. González-Escribano, Norberto Ortego-Centeno, Bernardo A. Pons-Estel, Sandra D'Alfonso, Gian Domenico Sebastiani, Torsten Witte, Bernard R. Lauwerys, E. Endreffy, László Kovács, Carlos Vasconcelos, Berta Martins Da Silva & 4 others Jonathan D. Wren, Javier Martin, Casimiro Castillejo-López, Marta E. Alarcón-Riquelme

Research output: Contribution to journalArticle

21 Citations (Scopus)

Abstract

Objectives: To perform fine mapping of the autoimmunity susceptibility gene BLK and identify functional variants involved in systemic lupus erythematosus (SLE). Methods: Genotyping of 1163 European SLE patients and 1482 controls and imputation were performed covering the BLK gene with 158 single-nucleotide polymorphisms. Logistic regression analysis was done using PLINK and conditional analyses using GENABEL's test score. Transfections of BLK constructs on HEK293 cells containing the novel mutation or the wild type form were analysed for their effect on protein half-life using a protein stability assay, cycloheximide and western blot. CHiP-qPCR for detection of nuclear factor κ B (NFkB) binding. Results: Fine mapping of BLK identified two independent genetic effects with functional consequences: one represented by two tightly linked associated haplotype blocks significantly enriched for NFκB-binding sites and numerous putative regulatory variants whose risk alleles correlated with low BLK mRNA levels. Binding of NFkBp50 and p65 to an associated 1.2 Kb haplotype segment was confirmed. A second independent genetic effect was represented by an Ala71Thr, low-frequency missense substitution with an OR=2.31 (95% CI 1.38 to 3.86). The 71Thr decreased BLK protein half-life. Conclusions: These results show that rare and common regulatory variants in BLK are involved in disease susceptibility and both, albeit independently, lead to reduced levels of BLK protein.

Original languageEnglish
Pages (from-to)1219-1226
Number of pages8
JournalAnnals of the Rheumatic Diseases
Volume71
Issue number7
DOIs
Publication statusPublished - Jul 2012

Fingerprint

Autoimmunity
Half-Life
Genes
Systemic Lupus Erythematosus
Haplotypes
Mutation
Proteins
Protein Stability
HEK293 Cells
Disease Susceptibility
Cycloheximide
Single Nucleotide Polymorphism
Transfection
Logistic Models
Western Blotting
Polymorphism
Alleles
Binding Sites
Regression Analysis
Regression analysis

ASJC Scopus subject areas

  • Rheumatology
  • Immunology
  • Biochemistry, Genetics and Molecular Biology(all)
  • Immunology and Allergy

Cite this

Delgado-Vega, A. M., Dozmorov, M. G., Quirós, M. B., Wu, Y. Y., Martínez-García, B., Kozyrev, S. V., ... Alarcón-Riquelme, M. E. (2012). Fine mapping and conditional analysis identify a new mutation in the autoimmunity susceptibility gene BLK that leads to reduced half-life of the BLK protein. Annals of the Rheumatic Diseases, 71(7), 1219-1226. https://doi.org/10.1136/annrheumdis-2011-200987

Fine mapping and conditional analysis identify a new mutation in the autoimmunity susceptibility gene BLK that leads to reduced half-life of the BLK protein. / Delgado-Vega, Angélica M.; Dozmorov, Mikhail G.; Quirós, Manuel Bernal; Wu, Ying Yu; Martínez-García, Belén; Kozyrev, Sergey V.; Frostegård, Johan; Truedsson, Lennart; De Ramón, Enrique; González-Escribano, María F.; Ortego-Centeno, Norberto; Pons-Estel, Bernardo A.; D'Alfonso, Sandra; Sebastiani, Gian Domenico; Witte, Torsten; Lauwerys, Bernard R.; Endreffy, E.; Kovács, László; Vasconcelos, Carlos; Da Silva, Berta Martins; Wren, Jonathan D.; Martin, Javier; Castillejo-López, Casimiro; Alarcón-Riquelme, Marta E.

In: Annals of the Rheumatic Diseases, Vol. 71, No. 7, 07.2012, p. 1219-1226.

Research output: Contribution to journalArticle

Delgado-Vega, AM, Dozmorov, MG, Quirós, MB, Wu, YY, Martínez-García, B, Kozyrev, SV, Frostegård, J, Truedsson, L, De Ramón, E, González-Escribano, MF, Ortego-Centeno, N, Pons-Estel, BA, D'Alfonso, S, Sebastiani, GD, Witte, T, Lauwerys, BR, Endreffy, E, Kovács, L, Vasconcelos, C, Da Silva, BM, Wren, JD, Martin, J, Castillejo-López, C & Alarcón-Riquelme, ME 2012, 'Fine mapping and conditional analysis identify a new mutation in the autoimmunity susceptibility gene BLK that leads to reduced half-life of the BLK protein', Annals of the Rheumatic Diseases, vol. 71, no. 7, pp. 1219-1226. https://doi.org/10.1136/annrheumdis-2011-200987
Delgado-Vega, Angélica M. ; Dozmorov, Mikhail G. ; Quirós, Manuel Bernal ; Wu, Ying Yu ; Martínez-García, Belén ; Kozyrev, Sergey V. ; Frostegård, Johan ; Truedsson, Lennart ; De Ramón, Enrique ; González-Escribano, María F. ; Ortego-Centeno, Norberto ; Pons-Estel, Bernardo A. ; D'Alfonso, Sandra ; Sebastiani, Gian Domenico ; Witte, Torsten ; Lauwerys, Bernard R. ; Endreffy, E. ; Kovács, László ; Vasconcelos, Carlos ; Da Silva, Berta Martins ; Wren, Jonathan D. ; Martin, Javier ; Castillejo-López, Casimiro ; Alarcón-Riquelme, Marta E. / Fine mapping and conditional analysis identify a new mutation in the autoimmunity susceptibility gene BLK that leads to reduced half-life of the BLK protein. In: Annals of the Rheumatic Diseases. 2012 ; Vol. 71, No. 7. pp. 1219-1226.
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abstract = "Objectives: To perform fine mapping of the autoimmunity susceptibility gene BLK and identify functional variants involved in systemic lupus erythematosus (SLE). Methods: Genotyping of 1163 European SLE patients and 1482 controls and imputation were performed covering the BLK gene with 158 single-nucleotide polymorphisms. Logistic regression analysis was done using PLINK and conditional analyses using GENABEL's test score. Transfections of BLK constructs on HEK293 cells containing the novel mutation or the wild type form were analysed for their effect on protein half-life using a protein stability assay, cycloheximide and western blot. CHiP-qPCR for detection of nuclear factor κ B (NFkB) binding. Results: Fine mapping of BLK identified two independent genetic effects with functional consequences: one represented by two tightly linked associated haplotype blocks significantly enriched for NFκB-binding sites and numerous putative regulatory variants whose risk alleles correlated with low BLK mRNA levels. Binding of NFkBp50 and p65 to an associated 1.2 Kb haplotype segment was confirmed. A second independent genetic effect was represented by an Ala71Thr, low-frequency missense substitution with an OR=2.31 (95{\%} CI 1.38 to 3.86). The 71Thr decreased BLK protein half-life. Conclusions: These results show that rare and common regulatory variants in BLK are involved in disease susceptibility and both, albeit independently, lead to reduced levels of BLK protein.",
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T1 - Fine mapping and conditional analysis identify a new mutation in the autoimmunity susceptibility gene BLK that leads to reduced half-life of the BLK protein

AU - Delgado-Vega, Angélica M.

AU - Dozmorov, Mikhail G.

AU - Quirós, Manuel Bernal

AU - Wu, Ying Yu

AU - Martínez-García, Belén

AU - Kozyrev, Sergey V.

AU - Frostegård, Johan

AU - Truedsson, Lennart

AU - De Ramón, Enrique

AU - González-Escribano, María F.

AU - Ortego-Centeno, Norberto

AU - Pons-Estel, Bernardo A.

AU - D'Alfonso, Sandra

AU - Sebastiani, Gian Domenico

AU - Witte, Torsten

AU - Lauwerys, Bernard R.

AU - Endreffy, E.

AU - Kovács, László

AU - Vasconcelos, Carlos

AU - Da Silva, Berta Martins

AU - Wren, Jonathan D.

AU - Martin, Javier

AU - Castillejo-López, Casimiro

AU - Alarcón-Riquelme, Marta E.

PY - 2012/7

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N2 - Objectives: To perform fine mapping of the autoimmunity susceptibility gene BLK and identify functional variants involved in systemic lupus erythematosus (SLE). Methods: Genotyping of 1163 European SLE patients and 1482 controls and imputation were performed covering the BLK gene with 158 single-nucleotide polymorphisms. Logistic regression analysis was done using PLINK and conditional analyses using GENABEL's test score. Transfections of BLK constructs on HEK293 cells containing the novel mutation or the wild type form were analysed for their effect on protein half-life using a protein stability assay, cycloheximide and western blot. CHiP-qPCR for detection of nuclear factor κ B (NFkB) binding. Results: Fine mapping of BLK identified two independent genetic effects with functional consequences: one represented by two tightly linked associated haplotype blocks significantly enriched for NFκB-binding sites and numerous putative regulatory variants whose risk alleles correlated with low BLK mRNA levels. Binding of NFkBp50 and p65 to an associated 1.2 Kb haplotype segment was confirmed. A second independent genetic effect was represented by an Ala71Thr, low-frequency missense substitution with an OR=2.31 (95% CI 1.38 to 3.86). The 71Thr decreased BLK protein half-life. Conclusions: These results show that rare and common regulatory variants in BLK are involved in disease susceptibility and both, albeit independently, lead to reduced levels of BLK protein.

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