Direct hydride shift mechanism and stereoselectivity of P450nor confirmed by QM/MM calculations

Balázs Krámos, Dóra K. Menyhárd, Julianna Oláh

Research output: Contribution to journalArticle

18 Citations (Scopus)

Abstract

Nitric oxide reductase (P450nor) found in Fusarium oxysporum catalyzes the reduction of nitric oxide to N2O in a multistep process. The reducing agent, NADH, is bound in the distal pocket of the enzyme, and direct hydride transfer occurs from NADH to the nitric oxide bound heme enzyme, forming intermediate I. Here we studied the possibility of hydride transfer from NADH to both the nitrogen and oxygen of the heme-bound nitric oxide, using quantum chemical and combined quantum mechanics/molecular mechanics (QM/MM) calculations, on two different protein models, representing both possible stereochemistries, a syn-and an anti-NADH arrangement. All calculations clearly favor hydride transfer to the nitrogen of nitric oxide, and the QM-only barrier and kinetic isotope effects are good agreement with the experimental values of intermediate I formation. We obtained higher barriers in the QM/MM calculations for both pathways, but hydride transfer to the nitrogen of nitric oxide is still clearly favored. The barriers obtained for the syn, Pro-R conformation of NADH are lower and show significantly less variation than the barriers obtained in the case of anti conformation. The effect of basis set and wide range of functionals on the obtained results are also discussed.

Original languageEnglish
Pages (from-to)872-885
Number of pages14
JournalJournal of Physical Chemistry B
Volume116
Issue number2
DOIs
Publication statusPublished - Jan 19 2012

ASJC Scopus subject areas

  • Physical and Theoretical Chemistry
  • Surfaces, Coatings and Films
  • Materials Chemistry

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