Barley (Hordeum vulgare L.) marker linkage map

A case study of various marker types and of mapping population structure

I. Karsai, P. Szucs, K. Mészáros, K. Puskás, Z. Bedő, O. Veisz

Research output: Contribution to journalArticle

6 Citations (Scopus)

Abstract

A barley mapping population consisting of 96 doubled haploid lines of anther culture origin was developed from the varieties Dicktoo and Kompolti Korai, which represent diverse types with respect to geographical origin and ecological adaptation. Several molecular marker techniques were used in mapping: among the markers with known chromosome location, RFLP, STS and SSR markers were applied to identify linkage groups and for comparative mapping, while RAPD and AFLP markers, which have random binding but provide useful information on polymorphism, were employed to fill in the linkage groups with markers. A total of 496 markers were tested in the DH population, 246 of which were included in the linkage map after eliminating markers that were completely linked with each other. The ratio of markers with known chromosome location to random markers in the 1107 cM map was one to three, and the mean recombination distance between the markers was 4.5 cM. Application of various marker methods and the effect of the population structure on the development of marker linkage maps are discussed.

Original languageEnglish
Pages (from-to)1551-1562
Number of pages12
JournalCereal Research Communications
Volume35
Issue number4
DOIs
Publication statusPublished - Dec 2007

Fingerprint

Hordeum
linkage groups
Hordeum vulgare
chromosome mapping
population structure
barley
case studies
chromosomes
anther culture
doubled haploids
Chromosomes
Population
amplified fragment length polymorphism
restriction fragment length polymorphism
Haploidy
genetic polymorphism
Restriction Fragment Length Polymorphisms
Genetic Recombination
genetic markers
methodology

Keywords

  • Barley
  • Hordeum vulgare L.
  • Linkage map
  • Molecular markers

ASJC Scopus subject areas

  • Agronomy and Crop Science

Cite this

Barley (Hordeum vulgare L.) marker linkage map : A case study of various marker types and of mapping population structure. / Karsai, I.; Szucs, P.; Mészáros, K.; Puskás, K.; Bedő, Z.; Veisz, O.

In: Cereal Research Communications, Vol. 35, No. 4, 12.2007, p. 1551-1562.

Research output: Contribution to journalArticle

@article{7cf253491bec430f8993718437f08a52,
title = "Barley (Hordeum vulgare L.) marker linkage map: A case study of various marker types and of mapping population structure",
abstract = "A barley mapping population consisting of 96 doubled haploid lines of anther culture origin was developed from the varieties Dicktoo and Kompolti Korai, which represent diverse types with respect to geographical origin and ecological adaptation. Several molecular marker techniques were used in mapping: among the markers with known chromosome location, RFLP, STS and SSR markers were applied to identify linkage groups and for comparative mapping, while RAPD and AFLP markers, which have random binding but provide useful information on polymorphism, were employed to fill in the linkage groups with markers. A total of 496 markers were tested in the DH population, 246 of which were included in the linkage map after eliminating markers that were completely linked with each other. The ratio of markers with known chromosome location to random markers in the 1107 cM map was one to three, and the mean recombination distance between the markers was 4.5 cM. Application of various marker methods and the effect of the population structure on the development of marker linkage maps are discussed.",
keywords = "Barley, Hordeum vulgare L., Linkage map, Molecular markers",
author = "I. Karsai and P. Szucs and K. M{\'e}sz{\'a}ros and K. Pusk{\'a}s and Z. Bedő and O. Veisz",
year = "2007",
month = "12",
doi = "10.1556/CRC.35.2007.4.2",
language = "English",
volume = "35",
pages = "1551--1562",
journal = "Cereal Research Communications",
issn = "0133-3720",
publisher = "Cereal Research Non-Profit Company",
number = "4",

}

TY - JOUR

T1 - Barley (Hordeum vulgare L.) marker linkage map

T2 - A case study of various marker types and of mapping population structure

AU - Karsai, I.

AU - Szucs, P.

AU - Mészáros, K.

AU - Puskás, K.

AU - Bedő, Z.

AU - Veisz, O.

PY - 2007/12

Y1 - 2007/12

N2 - A barley mapping population consisting of 96 doubled haploid lines of anther culture origin was developed from the varieties Dicktoo and Kompolti Korai, which represent diverse types with respect to geographical origin and ecological adaptation. Several molecular marker techniques were used in mapping: among the markers with known chromosome location, RFLP, STS and SSR markers were applied to identify linkage groups and for comparative mapping, while RAPD and AFLP markers, which have random binding but provide useful information on polymorphism, were employed to fill in the linkage groups with markers. A total of 496 markers were tested in the DH population, 246 of which were included in the linkage map after eliminating markers that were completely linked with each other. The ratio of markers with known chromosome location to random markers in the 1107 cM map was one to three, and the mean recombination distance between the markers was 4.5 cM. Application of various marker methods and the effect of the population structure on the development of marker linkage maps are discussed.

AB - A barley mapping population consisting of 96 doubled haploid lines of anther culture origin was developed from the varieties Dicktoo and Kompolti Korai, which represent diverse types with respect to geographical origin and ecological adaptation. Several molecular marker techniques were used in mapping: among the markers with known chromosome location, RFLP, STS and SSR markers were applied to identify linkage groups and for comparative mapping, while RAPD and AFLP markers, which have random binding but provide useful information on polymorphism, were employed to fill in the linkage groups with markers. A total of 496 markers were tested in the DH population, 246 of which were included in the linkage map after eliminating markers that were completely linked with each other. The ratio of markers with known chromosome location to random markers in the 1107 cM map was one to three, and the mean recombination distance between the markers was 4.5 cM. Application of various marker methods and the effect of the population structure on the development of marker linkage maps are discussed.

KW - Barley

KW - Hordeum vulgare L.

KW - Linkage map

KW - Molecular markers

UR - http://www.scopus.com/inward/record.url?scp=35449007323&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=35449007323&partnerID=8YFLogxK

U2 - 10.1556/CRC.35.2007.4.2

DO - 10.1556/CRC.35.2007.4.2

M3 - Article

VL - 35

SP - 1551

EP - 1562

JO - Cereal Research Communications

JF - Cereal Research Communications

SN - 0133-3720

IS - 4

ER -