Automatic Segmentation of Drosophila Neural Compartments Using GAL4 Expression Data Reveals Novel Visual Pathways

Karin Panser, L. Tirián, Florian Schulze, Santiago Villalba, Gregory S X E Jefferis, Katja Bühler, Andrew D. Straw

Research output: Contribution to journalArticle

17 Citations (Scopus)

Abstract

Identifying distinct anatomical structures within the brain and developing genetic tools to target them are fundamental steps for understanding brain function. We hypothesize that enhancer expression patterns can be used to automatically identify functional units such as neuropils and fiber tracts. We used two recent, genome-scale . Drosophila GAL4 libraries and associated confocal image datasets to segment large brain regions into smaller subvolumes. Our results (available at . https://strawlab.org/braincode) support this hypothesis because regions with well-known anatomy, namely the antennal lobes and central complex, were automatically segmented into familiar compartments. The basis for the structural assignment is clustering of voxels based on patterns of enhancer expression. These initial clusters are agglomerated to make hierarchical predictions of structure. We applied the algorithm to central brain regions receiving input from the optic lobes. Based on the automated segmentation and manual validation, we can identify and provide promising driver lines for 11 previously identified and 14 novel types of visual projection neurons and their associated optic glomeruli. The same strategy can be used in other brain regions and likely other species, including vertebrates. In this study, Panser et al. took advantage of recent, genome-wide . Drosophila enhancer expression datasets consisting of 3D brain image volumes and used clustering to automatically predict brain structures. They validated previously described regions and used novel predictions to make an atlas of the fly optic glomeruli.

Original languageEnglish
JournalCurrent Biology
DOIs
Publication statusAccepted/In press - Dec 23 2015

Fingerprint

Visual Pathways
Drosophila
Brain
brain
Optics
optics
Cluster Analysis
Genes
Genome
antennal lobe
optic lobe
Neuropil
genome
prediction
Atlases
Diptera
Libraries
Neurons
Vertebrates
Anatomy

Keywords

  • Clustering
  • Enhancers
  • Neuroanatomy
  • Vision

ASJC Scopus subject areas

  • Agricultural and Biological Sciences(all)
  • Biochemistry, Genetics and Molecular Biology(all)

Cite this

Automatic Segmentation of Drosophila Neural Compartments Using GAL4 Expression Data Reveals Novel Visual Pathways. / Panser, Karin; Tirián, L.; Schulze, Florian; Villalba, Santiago; Jefferis, Gregory S X E; Bühler, Katja; Straw, Andrew D.

In: Current Biology, 23.12.2015.

Research output: Contribution to journalArticle

Panser, Karin ; Tirián, L. ; Schulze, Florian ; Villalba, Santiago ; Jefferis, Gregory S X E ; Bühler, Katja ; Straw, Andrew D. / Automatic Segmentation of Drosophila Neural Compartments Using GAL4 Expression Data Reveals Novel Visual Pathways. In: Current Biology. 2015.
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