• 1728 Citations
  • 18 h-Index
20002020

Research output per year

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Research Output

  • 1728 Citations
  • 18 h-Index
  • 45 Article
  • 2 Conference contribution
  • 2 Review article
  • 1 Chapter
2020

Ligand-dependent intra- and interdomain motions in the PDZ12 tandem regulate binding interfaces in postsynaptic density protein-95

Kovács, B., Zajácz-Epresi, N. & Gáspári, Z., Mar 1 2020, In : FEBS letters. 594, 5, p. 887-902 16 p.

Research output: Contribution to journalArticle

Open Access
2019

Different modes of barrel opening suggest a complex pathway of ligand binding in human gastrotropin

Harmat, Z., Szabó, A. L., Tőke, O. & Gáspári, Z., May 2019, In : PloS one. 14, 5, e0216142.

Research output: Contribution to journalArticle

Open Access

Occurrence of ordered and disordered structural elements in postsynaptic proteins supports optimization for interaction diversity

Kiss-Tóth, A., Dobson, L., Péterfia, B., ángyán, A. F., Ligeti, B., Lukács, G. & Gáspári, Z., Jan 1 2019, In : Entropy. 21, 8, 761.

Research output: Contribution to journalArticle

Open Access
2018

Accurate NMR Determinations of Proton–Proton Distances

Boros, S., Gáspári, Z. & Batta, G., 2018, Annual Reports on NMR Spectroscopy. Webb, G. A. (ed.). Academic Press Inc., p. 1-39 39 p. (Annual Reports on NMR Spectroscopy; vol. 94).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Detection of single alpha-helices in large protein sequence sets using hardware acceleration

Kovács, Á., Dudola, D., Nyitray, L., Tóth, G., Nagy, Z. & Gáspári, Z., Oct 2018, In : Journal of Structural Biology. 204, 1, p. 109-116 8 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

New antimicrobial potential and structural properties of PAFB: A Cationic, cysteine-rich protein from penicillium chrysogenum Q176

Huber, A., Hajdu, D., Bratschun-Khan, D., Gáspári, Z., Varbanov, M., Philippot, S., Fizil, Á., Czajlik, A., Kele, Z., Sonderegger, C., Galgóczy, L., Bodor, A., Marx, F. & Batta, G., Dec 1 2018, In : Scientific reports. 8, 1, 1751.

Research output: Contribution to journalArticle

16 Citations (Scopus)
2017

Acceleration of a protein structure comparison algorithm on FPGA

Goretity, A., Nagy, Z. & Gáspári, Z., Oct 31 2017, 2017 European Conference on Circuit Theory and Design, ECCTD 2017. Institute of Electrical and Electronics Engineers Inc., 8093342

Research output: Chapter in Book/Report/Conference proceedingConference contribution

CoNSEnsX+ Webserver for the Analysis of Protein Structural Ensembles Reflecting Experimentally Determined Internal Dynamics

Dudola, D., Kovács, B. & Gáspári, Z., Aug 28 2017, In : Journal of Chemical Information and Modeling. 57, 8, p. 1728-1734 7 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

D19S mutation of the cationic, cysteine-rich protein PAF: Novel insights into its structural dynamics, thermal unfolding and antifungal function

Sonderegger, C., Fizil, Á., Burtscher, L., Hajdu, D., Muñoz, A., Gáspári, Z., Read, N. D., Batta, G. & Marx, F., Jan 2017, In : PloS one. 12, 1, e0169920.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Fine-tuning the extent and dynamics of binding cleft opening as a potential general regulatory mechanism in parvulin-type peptidyl prolyl isomerases

Czajlik, A., Kovács, B., Permi, P. & Gáspári, Z., Mar 16 2017, In : Scientific reports. 7, 44504.

Research output: Contribution to journalArticle

4 Citations (Scopus)
2016

Accelerating a charged single α-helix search algorithm in protein sequences using FPGA

Nagy, Z., Gáspári, Z. & Kovács, Á., Jan 1 2016, CNNA 2016 - 15th International Workshop on Cellular Nanoscale Networks and Their Applications. Tetzlaff, R. (ed.). IEEE Computer Society, p. 117-118 2 p. (International Workshop on Cellular Nanoscale Networks and their Applications; vol. 2016-August).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)
2015

A conserved charged single α-helix with a putative steric role in paraspeckle formation

Dobson, L., Nyitray, L. & Gáspári, Z., Dec 2015, In : RNA. 21, 12, p. 2023-2029 7 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)
28 Citations (Scopus)

The role of structural flexibility and stability in the interaction of serine proteases with their inhibitors

Gráf, L., Molnár, T., Kardos, J., Gáspári, Z. & Katona, G., Jul 1 2015, In : Current Protein and Peptide Science. 16, 6, p. 521-531 11 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)
2014

Are proposed early genetic codes capable of encoding viable proteins?

Ángyán, A. F., Ortutay, C. & Gáspári, Z., May 2014, In : Journal of Molecular Evolution. 78, 5, p. 263-274 12 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)
4 Citations (Scopus)
22 Citations (Scopus)
2013

Ensemble-based interpretations of NMR structural data to describe protein internal dynamics

Ángyán, A. F. & Gáspári, Z., Sep 2013, In : Molecules. 18, 9, p. 10548-10567 20 p.

Research output: Contribution to journalReview article

22 Citations (Scopus)
2012

Charged single alpha-helices in proteomes revealed by a consensus prediction approach

Gáspári, Z., Süveges, D., Perczel, A., Nyitray, L. & Tóth, G., Apr 1 2012, In : Biochimica et Biophysica Acta - Proteins and Proteomics. 1824, 4, p. 637-646 10 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

Estimating intrinsic structural preferences of de novo emerging random-sequence proteins: Is aggregation the main bottleneck?

Ángyán, A. F., Perczel, A. & Gáspári, Z., Jul 30 2012, In : FEBS letters. 586, 16, p. 2468-2472 5 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)
2011

Coiled coils as possible models of protein structure evolution

Ga'spa'ri, Z. & Nyitray, L., Jun 1 2011, In : Biomolecular Concepts. 2, 3, p. 199-210 12 p.

Research output: Contribution to journalReview article

8 Citations (Scopus)
2010

CoNSEnsX: An ensemble view of protein structures and NMR-derived experimental data

Ángyn, A. F., Szappanos, B., Perczel, A. & Gspri, Z., Nov 1 2010, In : BMC Structural Biology. 10, 39.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Detecting atypical examples of known domain types by sequence similarity searching: The SBASE domain library approach

Dhir, S., Pacurar, M., Franklin, D., Gáspári, Z., Kertész-Farkas, A., Kocsor, A., Eisenhaber, F. & Pongor, S., Dec 1 2010, In : Current Protein and Peptide Science. 11, 7, p. 538-549 12 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Folded-unfolded cross-predictions and protein evolution: The case study of coiled-coils

Szappanos, B., Süveges, D., Nyitray, L., Perczel, A. & Gáspári, Z., Apr 1 2010, In : FEBS letters. 584, 8, p. 1623-1627 5 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Interaction between separated consecutive complement control modules of human C1r: Implications for dimerization of the full-length protease

Láng, A., Major, B., Szilágyi, K., Gáspári, Z., Gál, P., Závodszky, P. & Perczel, A., Nov 19 2010, In : FEBS letters. 584, 22, p. 4565-4569 5 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Probing dynamic protein ensembles with atomic proximity measures

Gáspári, Z., Ángyán, A. F., Dhir, S., Franklin, D., Perczel, A., Pintar, A. & Pongor, S., Dec 1 2010, In : Current Protein and Peptide Science. 11, 7, p. 515-522 8 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Protein Dynamics as Reported by NMR

Gáspári, Z. & Perczel, A., Oct 15 2010, In : Annual Reports on NMR Spectroscopy. 71, C, p. 35-75 41 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Reconciling the lock-and-key and dynamic views of canonical serine protease inhibitor action

Gáspári, Z., Várnai, P., Szappanos, B. & Perczel, A., Jan 4 2010, In : FEBS letters. 584, 1, p. 203-206 4 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)
2009

Charged single α-helix: A versatile protein structural motif

Süveges, D., Gáspári, Z., Tóth, G. & Nyitray, L., Mar 1 2009, In : Proteins: Structure, Function and Bioinformatics. 74, 4, p. 905-916 12 p.

Research output: Contribution to journalArticle

47 Citations (Scopus)

Functional aspects of the solution structure and dynamics of PAF - A highly-stable antifungal protein from Penicillium chrysogenum

Batta, G., Barna, T., Gáspári, Z., Sándor, S., Kövér, K. E., Binder, U., Sarg, B., Kaiserer, L., Chhillar, A. K., Eigentler, A., Leiter, É., Hegedüs, N., Pócsi, I., Lindner, H. & Marx, F., May 2009, In : FEBS Journal. 276, 10, p. 2875-2890 16 p.

Research output: Contribution to journalArticle

67 Citations (Scopus)
2008

A redesigned genetic code for selective labeling in protein NMR

Gáspári, Z., Pál, G. & Perczel, A., Aug 1 2008, In : BioEssays. 30, 8, p. 772-780 9 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Distribution and evolution of short tandem repeats in closely related bacterial genomes

Kassai-Jáger, E., Ortutay, C., Tóth, G., Vellai, T. & Gáspári, Z., Feb 29 2008, In : Gene. 410, 1, p. 18-25 8 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)

Fast protein fold estimation from NMR-derived distance restraints

Ángyán, A. F., Perczel, A., Pongor, S. & Gáspári, Z., Jan 15 2008, In : Bioinformatics. 24, 2, p. 272-275 4 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)
2007

A protein classification benchmark collection for machine learning

Sonego, P., Pacurar, M., Dhir, S., Kertész-Farkas, A., Kocsor, A., Gáspári, Z., Leunissen, J. A. M. & Pongor, S., Jan 2007, In : Nucleic acids research. 35, SUPPL. 1, p. D232-D236

Research output: Contribution to journalArticle

37 Citations (Scopus)

Divergent microsatellite evolution in the human and chimpanzee lineages

Gáspári, Z., Ortutay, C. & Tóth, G., May 29 2007, In : FEBS letters. 581, 13, p. 2523-2526 4 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)
20 Citations (Scopus)
2006

Local binding with globally distributed changes in a small protease inhibitor upon enzyme binding

Gáspári, Z., Szenthe, B., Patthy, A., Westler, W. M., Gráf, L. & Perczel, A., Apr 1 2006, In : FEBS Journal. 273, 8, p. 1831-1842 12 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)
2005

Efficient recognition of folds in protein 3D structures by the improved PRIDE algorithm

Gáspári, Z., Vlahovicek, K. & Pongor, S., Aug 1 2005, In : Bioinformatics. 21, 15, p. 3322-3323 2 p.

Research output: Contribution to journalArticle

27 Citations (Scopus)

Structure and stability of β-pleated sheets

Perczel, A., Gáspári, Z. & Csizmadia, I. G., Aug 1 2005, In : Journal of Computational Chemistry. 26, 11, p. 1155-1168 14 p.

Research output: Contribution to journalArticle

49 Citations (Scopus)
2004

A simple fold with variations: The pacifastin inhibitor family

Gáspári, Z., Ortutay, C. & Perczel, A., Mar 1 2004, In : Bioinformatics. 20, 4, p. 448-451 4 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)
3 Citations (Scopus)
12 Citations (Scopus)
24 Citations (Scopus)

Vicinal Disulfide Bridge Conformers by Experimental Methods and by Ab Initio and DFT Molecular Computations

Hudáky, I., Gáspári, Z., Carugo, O., Čemažar, M., Pongor, S. & Perczel, A., Apr 1 2004, In : Proteins: Structure, Function and Genetics. 55, 1, p. 152-168 17 p.

Research output: Contribution to journalArticle

26 Citations (Scopus)
2003

Generation and analysis of the conformational potential energy surfaces of N-acetyl-N-methyl-L-alanine-N′-methylamide. An exploratory ab initio study

Bágyi, I., Balogh, B., Czajlik, A., Éliás, O., Gáspári, Z., Gergely, V., Hudáky, I., Hudáky, P., Kalászi, A., Károlyházy, L., Keserû, K., Kiss, R., Krajsovszky, G., Láng, B., Nagy, T., Rácz, Á., Szentesi, A., Tábi, T., Tapolcsányi, P., Vaik, J. & 5 others, Koo, J. C. P., Chass, G. A., Farkas, Ö., Perczel, A. & Mátyus, P., May 5 2003, In : Journal of Molecular Structure: THEOCHEM. 625, 1-3, p. 121-136 16 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Speciation in Chlamydia: Genomewide Phylogenetic Analyses Identified a Reliable Set of Acquired Genes

Ortutay, C., Gáspári, Z., Tóth, G., Jáger, E., Vida, G., Orosz, L. & Vellai, T., Dec 1 2003, In : Journal of Molecular Evolution. 57, 6, p. 672-680 9 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Structure-oriented rational design of chymotrypsin inhibitor models

Mucsi, Z., Gáspári, Z., Orosz, G. & Perczel, A., Sep 2003, In : Protein Engineering. 16, 9, p. 673-681 9 p.

Research output: Contribution to journalArticle

Open Access
7 Citations (Scopus)

Vicinal disulfide turns

Carugo, O., Čemažar, M., Zahariev, S., Hudáky, I., Gáspári, Z., Perczel, A. & Pongor, S., Sep 2003, In : Protein Engineering. 16, 9, p. 637-639 3 p.

Research output: Contribution to journalArticle

Open Access
89 Citations (Scopus)
2002
38 Citations (Scopus)
2000

Microsatellites in different eukaryotic genomes: Surveys and analysis

Tóth, G., Gáspári, Z. & Jurka, J., 2000, In : Genome Research. 10, 7, p. 967-981 15 p.

Research output: Contribution to journalArticle

946 Citations (Scopus)