• 800 Citations
  • 15 h-Index
1987 …2019

Research output per year

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Research Output

  • 800 Citations
  • 15 h-Index
  • 69 Article
  • 5 Review article
  • 1 Comment/debate
  • 1 Letter
2019

Key peptides and proteins in alzheimer’s disease

Penke, B., Bogár, F., Paragi, G., Gera, J. & Fülöp, L., Jan 1 2019, In : Current Protein and Peptide Science. 20, 6, p. 577-599 23 p.

Research output: Contribution to journalReview article

4 Citations (Scopus)

Rapid evolution of reduced susceptibility against a balanced dual-targeting antibiotic through stepping-stone mutations

Szili, P., Draskovits, G., Révész, T., Bogár, F., Balogh, D., Martinek, T., Daruka, L., Spohn, R., Vásárhelyi, B. M., Czikkely, M., Kintses, B., Grézal, G., Ferenc, G., Pál, C. & Nyerges, Á., Jan 1 2019, In : Antimicrobial agents and chemotherapy. 63, 9, e00207-19.

Research output: Contribution to journalArticle

1 Citation (Scopus)
2018
13 Citations (Scopus)
2017
1 Citation (Scopus)

β-amyloid and the pathomechanisms of Alzheimer’s disease: A comprehensive view

Penke, B., Bogár, F. & F l, L., Oct 1 2017, In : Molecules. 22, 10, 1692.

Research output: Contribution to journalReview article

29 Citations (Scopus)
2016

Characterizing the structural and folding properties of long-sequence hypomurocin B peptides and their analogs

Horváth, J., Násztor, Z., Bartha, F., Bogár, F. & Leitgeb, B., Sep 1 2016, In : Biopolymers. p. 645-657 13 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)
20 Citations (Scopus)

The interfacial tension concept, as revealed by fluctuations

Násztor, Z., Bogár, F. & Dér, A., Jun 1 2016, In : Current Opinion in Colloid and Interface Science. 23, p. 29-40 12 p.

Research output: Contribution to journalReview article

5 Citations (Scopus)
2015

A QM/MM program using frozen localized orbitals and the Huzinaga equation

Hégely, B., Bogár, F., Ferenczy, G. G. & Kállay, M., Nov 1 2015, In : Theoretical Chemistry Accounts. 134, 11, 132.

Research output: Contribution to journalArticle

5 Citations (Scopus)
7 Citations (Scopus)

Dynamics and structural determinants of ligand recognition of the 5-HT6 receptor

Vass, M., Jójárt, B., Bogár, F., Paragi, G., Keseru, G. M. & Tarcsay, Á., Dec 1 2015, In : Journal of Computer-Aided Molecular Design. 29, 12, p. 1137-1149 13 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Opposite effect of Ca2+/Mg2+ ions on the aggregation of native and precursor-derived Aβ42

Bogár, F., Simon, D., Bozsó, Z., Janáky, T., Veszelka, S., Tóth, A. E., Deli, M. A., Borics, A., Násztor, Z., Gyebrovszki, A., Penke, B. & Fülöp, L., Dec 1 2015, In : Structural Chemistry. 26, 5-6, p. 1389-1403 15 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)
2014

Influence of the sequence on the ab initio band structures of single and double stranded DNA models

Bogár, F., Bende, A. & Ladik, J., Jun 13 2014, In : Physics Letters, Section A: General, Atomic and Solid State Physics. 378, 30-31, p. 2157-2162 6 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

On the hofmeister effect: Fluctuations at the protein-water interface and the surface tension

Bogár, F., Bartha, F., Násztor, Z., Fábián, L., Leitgeb, B. & Dér, A., Jul 24 2014, In : Journal of Physical Chemistry B. 118, 29, p. 8496-8504 9 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)
2013

Hole mobilities of periodic models of DNA double helices in the nucleosomes at different temperatures

Bende, A., Bogár, F. & Ladik, J., Apr 5 2013, In : Chemical Physics Letters. 565, p. 128-131 4 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

The impact of molecular dynamics sampling on the performance of virtual screening against GPCRs

Tarcsay, Á., Paragi, G., Vass, M., Jójárt, B., Bogár, F. & Keseru, G. M., Nov 25 2013, In : Journal of Chemical Information and Modeling. 53, 11, p. 2990-2999 10 p.

Research output: Contribution to journalArticle

36 Citations (Scopus)
2012

Pauli potential functional for spherical inhomogeneous electron liquids generated by a bare Coulomb field

March, N. H., Nagy, Á., Bogár, F. & Bartha, F., May 1 2012, In : Physics and Chemistry of Liquids. 50, 3, p. 412-414 3 p.

Research output: Contribution to journalLetter

3 Citations (Scopus)

Possible role of Cl - ions in DNA-protein interactions in the nucleosomes

Bende, A., Bogár, F. & Ladik, J., Feb 16 2012, In : Chemical Physics Letters. 525-526, p. 115-119 5 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)
2011

Exploring and characterizing the folding processes of Lys- and Arg-containing Ala-based peptides: A molecular dynamics study

Janzsó, G., Bogár, F., Hudoba, L., Penke, B., Rákhely, G. & Leitgeb, B., Aug 10 2011, In : Computational Biology and Chemistry. 35, 4, p. 240-250 11 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Helix and H-bond formations of alanine-based peptides containing basic amino acids

Leitgeb, B., Janzsó, G., Hudoba, L., Penke, B., Rákhely, G. & Bogár, F., Dec 1 2011, In : Structural Chemistry. 22, 6, p. 1287-1295 9 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Model calculations of the energy band structures of double stranded DNA in the presence of water and Na+ ions

Bende, A., Bogár, F. & Ladik, J., Feb 1 2011, In : Solid State Communications. 151, 4, p. 301-305 5 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)
2 Citations (Scopus)
2010

Charge transfer between DNA and proteins in the nucleosomes

Ladik, J., Bende, A. & Bogár, F., Mar 1 2010, In : Theoretical Chemistry Accounts. 125, 3-6, p. 185-191 7 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Functionalization of gold nanoparticles with amino acid, β-amyloid peptides and fragment

Majzik, A., Fülöp, L., Csapó, E., Bogár, F., Martinek, T., Penke, B., Bíró, G. & Dékány, I., Nov 1 2010, In : Colloids and Surfaces B: Biointerfaces. 81, 1, p. 235-241 7 p.

Research output: Contribution to journalArticle

99 Citations (Scopus)

Relation between single-particle kinetic energy and exchange energy in DFT for the inhomogeneous electron liquid in the Be atom

Boǵar, F., Bartha, F. & March, N. H., Apr 1 2010, In : Physics and Chemistry of Liquids. 48, 2, p. 272-278 7 p.

Research output: Contribution to journalArticle

2009
2 Citations (Scopus)

Aspartic acid scaffold in bradykinin B1 antagonists

Huszár, J., Timár, Z., Bogár, F., Penke, B., Kiss, R., Szalai, K. K., Schmidt, É., Papp, A. & Keserü, G., Jul 13 2009, In : Journal of Peptide Science. 15, 6, p. 423-434 12 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Use of ab initio methods to classify four existing energy density functionals according to their possible variational validity

Amovilli, C., March, N. H., Bogár, F. & Gál, T., Aug 24 2009, In : Physics Letters, Section A: General, Atomic and Solid State Physics. 373, 35, p. 3158-3160 3 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)
2 Citations (Scopus)
2008
4 Citations (Scopus)

Hydrogen bonding of 3- and 5-methyl-6-aminouracil with natural DNA bases

Paragi, G., Szájli, E., Bogár, F., Kovács, L., Guerra, C. F. & Bickelhaupt, F. M., Nov 10 2008, In : New Journal of Chemistry. 32, 11, p. 1981-1987 7 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)
20 Citations (Scopus)

The role of water and K+ ion in the charge transfer between PO4 - groups of DNA and the lysine+ and arginine+ side chains of histone proteins

Bende, A., Bogár, F. & Ladik, J., Sep 22 2008, In : Chemical Physics Letters. 463, 1-3, p. 211-213 3 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)
2007

Calculation of the band structure of polyguanilic acid in the presence of water and Na+ ions

Ladik, J., Bende, A. & Bogar, F., Jan 1 2007, In : Journal of Chemical Physics. 127, 5, 055102.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Charge transfer between the PO4- groups of DNA and the arginine+ and lysine+ side chains of proteins

Bende, A., Bogár, F. & Ladik, J., Mar 22 2007, In : Chemical Physics Letters. 437, 1-3, p. 117-119 3 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Studying the structural properties of polyalanine and polyglutamine peptides

Leitgeb, B., Kerényi, Á., Bogár, F., Paragi, G., Penke, B. & Rákhely, G., Dec 1 2007, In : Journal of Molecular Modeling. 13, 11, p. 1141-1150 10 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)
2006

Calculation of the charge-carrier mobility of polyguanylic acid: The simultaneous effect of stretching and twisting

Beleznay, F. B., Bogar, F., Szekeres, Z. & Ladik, J., Feb 28 2006, In : Journal of Chemical Physics. 124, 7

Research output: Contribution to journalArticle

6 Citations (Scopus)

Density functional crystal orbital study of cyano-substituted poly(para-Phenylene-Vinylene) and poly(Quinoxaline-Vinylene)

Bartha, F., Howard, I. A., Geerlings, P., Van Alsenoy, C., Vanderzande, D., Cleij, T. J. & Bogár, F., Jul 1 2006, In : International Journal of Quantum Chemistry. 106, 8, p. 1912-1923 12 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

The effect of breathing vibration on the charge carrier mobility of a guanine-cytosine base pair stack

Beleznay, F. B., Szekeres, Z., Bogár, F. & Ladik, J., Jun 24 2006, In : Chemical Physics Letters. 424, 4-6, p. 399-402 4 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)
2005

B3LYP, BLYP and PBE DFT band structures of the nucleotide base stacks

Szekeres, Z., Bogár, F. & Ladik, J., Apr 15 2005, In : International Journal of Quantum Chemistry. 102, 4, p. 422-426 5 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Comparative study of SP[6-11] and its analogs using simulated annealing

Bogár, F., Leitgeb, B., Paragi, G., Orosz, A. & Penke, B., May 1 2005, In : Biopolymers. 78, 1, p. 35-45 11 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Density functional study of infinite polyserine chains

Bogár, F., Szekeres, Z., Bartha, F., Penke, B. & Ladik, J., Aug 7 2005, In : Physical Chemistry Chemical Physics. 7, 15, p. 2965-2969 5 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Density-functional study of the mechanical and electronic properties of narrow carbon nanotubes under axial stress

Bogár, F., Mintmire, J. W., Bartha, F., Mezo, T. & Alsenoy, C. V., Aug 15 2005, In : Physical Review B - Condensed Matter and Materials Physics. 72, 8, 085452.

Research output: Contribution to journalArticle

31 Citations (Scopus)

Geometry optimization of the cytosine molecules in a cytosine stack using the B3LYP crystal orbital method

Szekeres, Z. S., Bogár, F., Bartha, F. & Ladik, J., Oct 5 2005, In : International Journal of Quantum Chemistry. 105, 1, p. 74-78 5 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)
2004

Comparison of HF, HF + MP2, LDA, BLYP, and B3LYP band structures of the homopolypeptides

Ladik, J., Bogar, F. & Penke, B., Jul 5 2004, In : International Journal of Quantum Chemistry. 98, 6, p. 522-527 6 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Correlation corrected band structures of homopolypeptides V. B3LYP band structures of 19 homopolypeptides

Bogar, F. & Ladik, J., Jul 15 2004, In : International Journal of Quantum Chemistry. 99, 1, p. 47-52 6 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Effect of static electric field on the HF band structure of a guanine stack

Martinez, A., Bogar, F., Otto, P. & Ladik, J., Sep 15 2004, In : International Journal of Quantum Chemistry. 99, 5 SPEC. ISS., p. 833-840 8 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)
2003